PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05417.20
Common NameJCGZ_09727, WRI1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 359aa    MW: 40830.3 Da    PI: 7.0491
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05417.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1146102155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Jcr4S05417.20  46 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 102
                    789******************88887784446666.9*******************98 PP

2AP252.61.2e-16145196155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Jcr4S05417.20 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 196
                    89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-846102IPR001471AP2/ERF domain
CDDcd000188.72E-1746112No hitNo description
SuperFamilySSF541712.03E-1446112IPR016177DNA-binding domain
SMARTSM003804.4E-1847116IPR001471AP2/ERF domain
PROSITE profilePS5103217.96547110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1247111IPR001471AP2/ERF domain
PRINTSPR003672.4E-54859IPR001471AP2/ERF domain
CDDcd000189.73E-25145206No hitNo description
PfamPF008474.3E-12145196IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-18145206IPR016177DNA-binding domain
SMARTSM003802.7E-26146210IPR001471AP2/ERF domain
PROSITE profilePS5103218.953146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18146205IPR001471AP2/ERF domain
PRINTSPR003672.4E-5186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MCITEGEAQA TRCVKRRRRD AVDNQILQQQ TDQTSATAAA TVKRSSRFRG VSRHRWTGRY  60
EAHLWDKLSW NVTQKKKGKQ GAYDEEESAA RAYDLAALKY WGTSTFTNFP ISDYEKEIEI  120
MQTVTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ  180
EEAARAYDIA AIEYRGINAV TNFDLSTYIR WLKPGVAANE PETILEPSMF PSTDNYIPIE  240
ENKPSFFNIT QFSSDCLNSP KRPEVFQNKI SSSPYQKTSS PTALSLLLRS SIFRELVEKN  300
SNVSGDENDG EEGKNQPQIG GDDEFSGIFY EGIGEIPTFA YSSDKDGLDL QERELQFVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0854480.0KM085448.1 Jatropha curcas WRI1 (WRI1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082982.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y68e-90WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A067LE000.0A0A067LE00_JATCU; Uncharacterized protein
STRINGPOPTR_0017s11470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-89AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]